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2006 Yamaha Fjr1300ae problems

The most common problem on the 2006 Yamaha Fjr1300ae is electrical system, typically around 16,500 miles. Its complaint count is close to a typical Fjr1300ae model year.

Typical yearClose to a typical year
Year score
75/100
Owner complaints
16
Recalls
0
Service bulletins
4
Worst area
Electrical

The worst 2006 Yamaha Fjr1300ae problems

Ranked by number of owner complaints. Mileage and cost come from what owners wrote.

Problems by type

Tap a problem to see which part fails, at what mileage and in which other years.

Recalls

No recalls on record for this model year.

Defect investigations

Motorcycle stalling - electricalOpened November 21, 2008, closed January 9, 2009

Odi is aware of at least 45 allegations of fjr1300 engine stalling while underway due to an ignition switch failure.in some instances, cycling the switch will allow re-start.fjrforum.com has numerous threads alleging the same issue.shortly after opening this ea, and before receiving a related information request from us, yamaha decided to conduct a safety recall (09v‑002) to install new ignition switches in all my 2006-8 and early my 2009 fjr1300 motorcycles.with that decision, this investigation is closed.

EA08025

Motorcycle stalling - electricalOpened August 8, 2008, closed November 21, 2008

Odi is aware of at least 45 allegations of fjr1300 engine stalling while underway due to an ignition switch failure.in some instances, cycling the switch will allow re-start.fjrforum.com has numerous threads alleging the same issue.to gather more focused information about this subject, we are upgrading this pe to an ea (ea08-025).

PE08048

Technical service bulletins for the 2006 Yamaha Fjr1300ae 4

Bulletins tell dealers how to fix known problems. A warranty extension means the manufacturer pays for that repair for longer.

What 2006 Yamaha Fjr1300ae owners say

Most recent owner complaints, unedited.

Filed Oct 30, 2018 · Transmission · IL

I was west bound on i80 on my yamaha fjr1300ae 2006 motorcycle about 10 miles west of joliet, il. A warning light came on "shift sh46" as I continued riding I attempted to shift gears with the paddle shifter (electric shift). The transmission would not shift. I attempted to down shift using the foot operated manual shift with the same results. The transmission was locked in 5th gear. I pulled off an exit ramp at ottawa, il and the engine stopped operating (stalled). I turned off the ignition and manually put the transmission in neutral. After a couple of minutes I restarted the fjr1300ae motorcycle, and continued to my destination. The same instance occurred on 10/01/2018 on i80 during the return trip from ottawa, il. The motorcycle was again locked in 5th gear with the same warning lights. The motorcycle stalled in 5th gear, and I performed the same tasks as before restarted the fjr1300ae continuing on to my destination. I have not had a reoccurrence since 10/01/2018.

Filed Jun 20, 2011 · Electrical · 9,554 miles · LA

The motorcycle's engine quit suddenly without warning. From the on-line fjr forum and my personal inspections of electrical components in my bike, I have determined that this was caused by the well known yamaha fjr 1300 electrical grounding issue. A recall by yamaha is needed. This has been a known fjr issue for three years.

Filed Feb 4, 2011 · Engine · 8,500 miles · TX

Yamaha fjr ae 2006. I purchased this bike in 2010 with only 3500 miles on it. Riding with friends we were about to enter a major interstate highway in dallas, tx. Upon giving the bike throttle the engine suddenly lost all power at about 50 miles per hour. The speedometer and tachometer were jumping from zero to maximum several times. I almost lost control and other behind me almost crashed into me from behind. As I began to pull off the ramp out of the way of other traffic suddenly the bike restarted and regained power. It has not done this again. When I took the bike to the local yamaha dealer they told me there were no active recalls on this model. Now I find that indeed the ignition switch has a safety recall and I'm quite sure this is the problem. I will return to the dealer to have the ignition recall completed.

Filed Jun 27, 2010 · Electrical · 25,090 miles · IL

2006 yamaha fjr1300. Vehicle was being ridding and the speedometer stopped working, ABS and check engine lights started flashing and the gear indicator was also flashing. This is the ae model with electrical shifting. It was stuck in 5th gear and would not down shift. I was able to return it to the parking lot in high gear and turn off the motor. Called dealer and he cleaned a corroded ground spider and vehicle is now operating properly again.

Filed Feb 14, 2010 · Electrical · 24,350 miles · CA

There were no memorable events leading up to the failure. There are no modifications to the motor, electrical, or ignition systems. All systems remain stock from the dealer/manufacturer. The motor was cutting in and out like there was an electrical interruption. At the same time that the motor was cutting in and out, the turn signals and high beams indicator would turn on for as long as the motor was cutting in and out, which was very fast (example: .5 second). This condition continued for 3 months with no regularity. The complete failure finally occurred while traveling home from work on the freeway. I was able to safely get to the side of the road, but was unable to get the motor started. I had to call a tow truck and pay to have the vehicle towed to my residence. Found an electrical connector (known as s4 spider ground) that serves as a common ground to 5 other electrical wires was melted, like it was over heating from inside the connector. This connector does not contact any hot surfaces. I cleaned the connector with electrical contact cleaner. I picked out the melted plastic that was blocking the connector holes. I also cleaned off the connector plug that connects all the electrical connector terminals together due to corrosion and melted plastic stuck to it. Finally, I applied die-electric grease to the connectors to reduce corrosion and improve the connection between the connectors and the connector plug. I could not replace the connector without replacing the entire head light electrical harness. This fix lasted for 1 year before failing again. I did the same cleaning as I had mentioned above, but it failed again after 2 months. I then soldered 2 separate wires to the top of the 6 prong connector and attached those wires to two different points on the vehicle. The last fix has lasted 11 months with no more evidence of overheating to the s4 grounding plug. There has not been any more engine cutting in and out symptoms either.

Filed Jan 19, 2010 · Electrical · 20,912 miles · FL

2006 yamaha fjr1300ae with 20,000 miles. Left me stranded when it suddenly would not start. Symptoms included: 1.the fuel gauge bar display shows a full tank and the whole bar display is blinking on and off. 2. Horn won't work 3. The headlight high beam indicator is on, although the headlight is not on and switch is in the low position 4. Both turn signal indicators are steady on 5. No error codes 6. Neutral indicator is on this is a motorcycle witha computerized clutch - so no manual shift. When it is dead there is no moving it. Towed to my mechanic who discovered a melted ground junction in the main electrical harness under the fuel tank. Replaced both upper and lower harnesses at a cost of over $1000.

Filed Jan 13, 2010 · Electrical · 26,000 miles · OR

This is on a 2006 yamaha fjr1300ae model motorcycle with about 26k miles on it. I started the motorcycle, it ran for about 1 to 2 seconds then shutdown and would not restart. This was the first and only occurrence. Upon inspection by an authorized dealership service technician it was found to have an overheated, melted ground junction in the main electrical harness. The manufacturer is going to replace the entire main harness under the extended warranty I have. The old harness is being sent back to the oem for inspection. It is my understanding from monitoring certain internet forums for this machine that other owners are having identical failures. Inasmuch as this defect can cause the motorcycle engine to suddenly stop running, there is the potential for a serious or fatal crash injury.

Filed Jan 4, 2010 · Electrical · 32,000 miles · CA

2006 yamaha fjr 1300 ae motorcycle.

Filed Aug 26, 2008 · Electrical · 15,000 miles · AZ

Ignition switch failed when in motion. This is an intermittent problem and causes the motorcycle to lose all power. Dealer replaced switch. I'm reporting this so that you can lean on yamaha to replace all switches.

Filed Aug 13, 2008 · Electrical · 8,000 miles · AZ

While pulling into the parking lot of work 2006 yamaha fjr1300ae just died. All power was lost and motor just stopped. The bike was completely dead and the failure was in the ignition switch. It took over 2 weeks to have the switch replaced.

Compare the 2006 Yamaha Fjr1300ae

Other model years

2006

Questions about the 2006 Yamaha Fjr1300ae

Is the 2006 Yamaha Fjr1300ae reliable?

Owners have filed 16 complaints about the 2006 Yamaha Fjr1300ae, close to a typical Fjr1300ae model year.

What is the 2006 Yamaha Fjr1300ae year score?

The 2006 Yamaha Fjr1300ae scores 75 out of 100 (average). The score compares it with the other model years of the Yamaha Fjr1300ae: 75 is a typical year, 50 means twice the usual complaints, and serious complaints and recalls lower it.

What is the most common problem with the 2006 Yamaha Fjr1300ae?

Electrical system, with 13 complaints, typically around 16,500 miles. Next is engine (2).

How many recalls does the 2006 Yamaha Fjr1300ae have?

No recalls on record.

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